Reference

• cellmaps_ppidownloader package
  • Submodules
  • cellmaps_ppidownloader.cellmaps_ppidownloadercmd module
    • main()
  • cellmaps_ppidownloader.exceptions module
    • CellMapsPPIDownloaderError
  • cellmaps_ppidownloader.gene module
    • APMSGeneNodeAttributeGenerator
      • APMSGeneNodeAttributeGenerator.BAITLIST_GENE_ID
      • APMSGeneNodeAttributeGenerator.BAITLIST_GENE_SYMBOL
      • APMSGeneNodeAttributeGenerator.BAITLIST_NUM_INTERACTORS
      • APMSGeneNodeAttributeGenerator.GENEID_COL1
      • APMSGeneNodeAttributeGenerator.GENEID_COL2
      • APMSGeneNodeAttributeGenerator.SYMBOL_COL1
      • APMSGeneNodeAttributeGenerator.SYMBOL_COL2
      • APMSGeneNodeAttributeGenerator.get_apms_baitlist_from_tsvfile()
      • APMSGeneNodeAttributeGenerator.get_apms_edgelist()
      • APMSGeneNodeAttributeGenerator.get_apms_edgelist_from_tsvfile()
      • APMSGeneNodeAttributeGenerator.get_gene_node_attributes()
    • CM4AIGeneNodeAttributeGenerator
      • CM4AIGeneNodeAttributeGenerator.get_apms_edgelist()
      • CM4AIGeneNodeAttributeGenerator.get_apms_edgelist_from_tsvfile()
      • CM4AIGeneNodeAttributeGenerator.get_gene_node_attributes()
    • GeneNodeAttributeGenerator
      • GeneNodeAttributeGenerator.add_geneids_to_set()
      • GeneNodeAttributeGenerator.get_gene_node_attributes()
    • GeneQuery
      • GeneQuery.get_symbols_for_genes()
      • GeneQuery.querymany()
  • cellmaps_ppidownloader.runner module
    • CellmapsPPIDownloader
      • CellmapsPPIDownloader.BAITLIST_FILEKEY
      • CellmapsPPIDownloader.CM4AI_ROCRATE
      • CellmapsPPIDownloader.EDGELIST_FILEKEY
      • CellmapsPPIDownloader.generate_readme()
      • CellmapsPPIDownloader.get_example_provenance()
      • CellmapsPPIDownloader.get_ppi_edgelist_file()
      • CellmapsPPIDownloader.get_ppi_gene_node_attributes_file()
      • CellmapsPPIDownloader.get_ppi_gene_node_errors_file()
      • CellmapsPPIDownloader.run()
  • Module contents