Index

A

add_geneids_to_set() (cellmaps_ppidownloader.gene.GeneNodeAttributeGenerator static method)

APMSGeneNodeAttributeGenerator (class in cellmaps_ppidownloader.gene)

B

BAITLIST_FILEKEY (cellmaps_ppidownloader.runner.CellmapsPPIDownloader attribute) BAITLIST_GENE_ID (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute)

BAITLIST_GENE_SYMBOL (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute) BAITLIST_NUM_INTERACTORS (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute)

C

cellmaps_ppidownloader module cellmaps_ppidownloader.cellmaps_ppidownloadercmd module cellmaps_ppidownloader.exceptions module cellmaps_ppidownloader.gene module

cellmaps_ppidownloader.runner module CellmapsPPIDownloader (class in cellmaps_ppidownloader.runner) CellMapsPPIDownloaderError CM4AI_ROCRATE (cellmaps_ppidownloader.runner.CellmapsPPIDownloader attribute) CM4AIGeneNodeAttributeGenerator (class in cellmaps_ppidownloader.gene)

E

EDGELIST_FILEKEY (cellmaps_ppidownloader.runner.CellmapsPPIDownloader attribute)

G

GENEID_COL1 (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute) GENEID_COL2 (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute) GeneNodeAttributeGenerator (class in cellmaps_ppidownloader.gene) GeneQuery (class in cellmaps_ppidownloader.gene) generate_readme() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader method) get_apms_baitlist_from_tsvfile() (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator static method) get_apms_edgelist() (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator method) (cellmaps_ppidownloader.gene.CM4AIGeneNodeAttributeGenerator method) get_apms_edgelist_from_tsvfile() (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator static method) (cellmaps_ppidownloader.gene.CM4AIGeneNodeAttributeGenerator static method)

get_example_provenance() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader static method) get_gene_node_attributes() (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator method) (cellmaps_ppidownloader.gene.CM4AIGeneNodeAttributeGenerator method) (cellmaps_ppidownloader.gene.GeneNodeAttributeGenerator method) get_ppi_edgelist_file() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader method) get_ppi_gene_node_attributes_file() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader method) get_ppi_gene_node_errors_file() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader method) get_symbols_for_genes() (cellmaps_ppidownloader.gene.GeneQuery method)

M

main() (in module cellmaps_ppidownloader.cellmaps_ppidownloadercmd) module cellmaps_ppidownloader cellmaps_ppidownloader.cellmaps_ppidownloadercmd cellmaps_ppidownloader.exceptions cellmaps_ppidownloader.gene cellmaps_ppidownloader.runner

Q

querymany() (cellmaps_ppidownloader.gene.GeneQuery method)

R

run() (cellmaps_ppidownloader.runner.CellmapsPPIDownloader method)

S

SYMBOL_COL1 (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute)

SYMBOL_COL2 (cellmaps_ppidownloader.gene.APMSGeneNodeAttributeGenerator attribute)